{
  "_id": "6a2138f2cd65a98ecbd2762d",
  "Package": "SOMEnv",
  "Type": "Package",
  "Title": "SOM Algorithm for the Analysis of Multivariate Environmental\nData",
  "Version": "0.1.1",
  "Authors@R": "c(\nperson(\"Sabina\", \"Licen\", role=c(\"aut\", \"cre\"), email= \"slicen@units.it\"),\nperson(\"Marco\", \"Franzon\", role=c(\"aut\"), email = \"franzonmarco94@gmail.com\"),\nperson(\"Tommaso\", \"Rodani\", role=c(\"aut\"), email = \"tommaso.rodani@gmail.com\"),\nperson(\"Pierluigi\", \"Barbieri\", role=c(\"aut\"), email = \"barbierip@units.it\")\n)",
  "Maintainer": "Sabina Licen <slicen@units.it>",
  "Description": "Analysis of multivariate environmental high frequency data\nby Self-Organizing Map and k-means clustering algorithms. By\nmeans of the graphical user interface it provides a comfortable\nway to elaborate by self-organizing map algorithm rather big\ndatasets (txt files up to 100 MB ) obtained by environmental\nhigh-frequency monitoring by sensors/instruments. The functions\npresent in the package are based on 'kohonen' and 'openair'\npackages implemented by functions embedding Vesanto et al.\n(2001)\n<http://www.cis.hut.fi/projects/somtoolbox/package/papers/techrep.pdf>\nheuristic rules for map initialization parameters, k-means\nclustering algorithm and map features visualization. Cluster\nprofiles visualization as well as graphs dedicated to the\nvisualization of time-dependent variables Licen et al. (2020)\n<doi:10.4209/aaqr.2019.08.0414> are provided.",
  "License": "GPL-2",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.1.1",
  "URL": "https://github.com/SomEnv/somenv",
  "BugReports": "https://github.com/SomEnv/somenv/issues",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-04 08:32:12 UTC",
    "User": "root"
  },
  "Author": "Sabina Licen [aut, cre], Marco Franzon [aut], Tommaso Rodani\n[aut], Pierluigi Barbieri [aut]",
  "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev libxml2-dev\nlibx11-dev zlib1g-dev",
  "Repository": "https://somenv.r-universe.dev",
  "Date/Publication": "2021-01-21 17:23:56 UTC",
  "RemoteUrl": "https://github.com/somenv/somenv",
  "RemoteRef": "HEAD",
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  "RemoteSubdir": "SOMEnv",
  "MD5sum": "0020fb3105c23db0057e81b8964f5291",
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  "_type": "src",
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  "_created": "2026-06-04T08:32:12.000Z",
  "_published": "2026-06-04T08:36:02.557Z",
  "_distro": "noble",
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    "author": "Tommaso Rodani <trodani@sissa.it>",
    "committer": "Tommaso Rodani <trodani@sissa.it>",
    "message": "fix imports \n\ndeleted rogue file",
    "time": 1611249836
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  "_maintainer": {
    "name": "Sabina Licen",
    "email": "slicen@units.it"
  },
  "_registered": true,
  "_dependencies": [
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      "package": "rlist",
      "role": "Imports"
    },
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      "package": "kohonen",
      "role": "Imports"
    },
    {
      "package": "shiny",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "plyr",
      "role": "Imports"
    },
    {
      "package": "openair",
      "role": "Imports"
    },
    {
      "package": "colourpicker",
      "role": "Imports"
    },
    {
      "package": "shinycssloaders",
      "role": "Imports"
    },
    {
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      "role": "Imports"
    }
  ],
  "_owner": "somenv",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 1,
  "_contributors": [
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      "count": 12,
      "uuid": 43781037
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    "type": "organization",
    "name": "SomEnv"
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  "_downloads": {
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    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/SOMEnv"
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  "_assets": [
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    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
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    "extra/readme.md",
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    "manual.pdf"
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  "_homeurl": "https://github.com/somenv/somenv",
  "_realowner": "somenv",
  "_cranurl": true,
  "_releases": [
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      "date": "2021-01-25"
    },
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      "version": "1.1.1",
      "date": "2021-03-02"
    },
    {
      "version": "1.1.2",
      "date": "2021-07-26"
    }
  ],
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    "BmusClus",
    "BoxClus",
    "BoxUnits",
    "CodeCoord",
    "DailyBar",
    "Freq",
    "FreqD",
    "FreqM",
    "Hexagons",
    "HexagonsClus",
    "HexagonsVar",
    "HexaHits",
    "HexaHitsQuant",
    "HexaQerrs",
    "HexaQerrsQuant",
    "kmeans_clustersRProg",
    "NClusChange",
    "paramQuant",
    "som_dimR",
    "som_initR",
    "som_umatR",
    "SomEnvGUI",
    "SOMtopol",
    "UmatGraph"
  ],
  "_help": [
    {
      "page": "BmusCentr",
      "title": "BMUs of the cluster centroids",
      "topics": [
        "BmusCentr"
      ]
    },
    {
      "page": "BmusClus",
      "title": "Cluster assignment for the experimental data",
      "topics": [
        "BmusClus"
      ]
    },
    {
      "page": "BoxClus",
      "title": "Boxplot of prototype variables split by cluster and variable",
      "topics": [
        "BoxClus"
      ]
    },
    {
      "page": "BoxUnits",
      "title": "Boxplot of prototype variables split by cluster",
      "topics": [
        "BoxUnits"
      ]
    },
    {
      "page": "ClusCol",
      "title": "Custom color sequence for clusters",
      "topics": [
        "ClusCol"
      ]
    },
    {
      "page": "CodeCoord",
      "title": "Prototype coordinates for graph",
      "topics": [
        "CodeCoord"
      ]
    },
    {
      "page": "DailyBar",
      "title": "Plot of daily percentages for each cluster",
      "topics": [
        "DailyBar"
      ]
    },
    {
      "page": "db_indexR",
      "title": "Evaluate Davis-Bouldin index for the cluster split of data input",
      "topics": [
        "db_indexR"
      ]
    },
    {
      "page": "Freq",
      "title": "Percentage frequency for each cluster",
      "topics": [
        "Freq"
      ]
    },
    {
      "page": "FreqD",
      "title": "Daily percentage frequency for each cluster",
      "topics": [
        "FreqD"
      ]
    },
    {
      "page": "FreqM",
      "title": "Monthly percentage frequency for each cluster",
      "topics": [
        "FreqM"
      ]
    },
    {
      "page": "Hexa",
      "title": "Function to draw an hexagon around a point",
      "topics": [
        "Hexa"
      ]
    },
    {
      "page": "Hexagons",
      "title": "Function to draw an hexagonal SOM map",
      "topics": [
        "Hexagons"
      ]
    },
    {
      "page": "HexagonsClus",
      "title": "SOM map with clusters",
      "topics": [
        "HexagonsClus"
      ]
    },
    {
      "page": "HexagonsVar",
      "title": "Heatmaps",
      "topics": [
        "HexagonsVar"
      ]
    },
    {
      "page": "HexaHits",
      "title": "Hits distribution on the SOM map",
      "topics": [
        "HexaHits"
      ]
    },
    {
      "page": "HexaHitsQuant",
      "title": "Hits distribution on the SOM map",
      "topics": [
        "HexaHitsQuant"
      ]
    },
    {
      "page": "HexaQerrs",
      "title": "Realtive quantization error distribution on the SOM map",
      "topics": [
        "HexaQerrs"
      ]
    },
    {
      "page": "HexaQerrsQuant",
      "title": "Realtive quantization error distribution on the SOM map",
      "topics": [
        "HexaQerrsQuant"
      ]
    },
    {
      "page": "kmeans_clustersRProg",
      "title": "K-means algorithm applied for different values of clusters",
      "topics": [
        "kmeans_clustersRProg"
      ]
    },
    {
      "page": "NClusChange",
      "title": "Custom number sequence for clusters",
      "topics": [
        "NClusChange"
      ]
    },
    {
      "page": "paramQuant",
      "title": "Basic statistics of values present in the input vector",
      "topics": [
        "paramQuant"
      ]
    },
    {
      "page": "som_dimR",
      "title": "Calculate map dimensions",
      "topics": [
        "som_dimR"
      ]
    },
    {
      "page": "som_initR",
      "title": "Calculate initialization matrix for SOM training",
      "topics": [
        "som_initR"
      ]
    },
    {
      "page": "som_kmeansRProg",
      "title": "K-means algorithm applied for a specific number of clusters",
      "topics": [
        "som_kmeansRProg"
      ]
    },
    {
      "page": "som_mdistR",
      "title": "Evaluate pairwise distance matrix for the given codebook",
      "topics": [
        "som_mdistR"
      ]
    },
    {
      "page": "som_umatR",
      "title": "Unified distance matrix for the SOM map",
      "topics": [
        "som_umatR"
      ]
    },
    {
      "page": "SomEnvGUI",
      "title": "The function starts the SOMEnv GUI",
      "topics": [
        "SomEnvGUI"
      ]
    },
    {
      "page": "SOMtopol",
      "title": "Topographical error for the SOM map",
      "topics": [
        "SOMtopol"
      ]
    },
    {
      "page": "UmatGraph",
      "title": "U-matrix plot",
      "topics": [
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      ]
    }
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